MRIQC: individual T1w report

Summary

Subject ID: 043_ControlPre.
Date and time: 2018-05-06, 21:33.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.25740841629868144
cnr			4.628642193540666
efc			0.5764791893317065
fber			111.84467315673828
fwhm	avg		3.928473333333334
fwhm	x		3.85002
fwhm	y		4.1409
fwhm	z		3.7945
icvs	csf		0.17822518016745148
icvs	gm		0.48255934278813123
icvs	wm		0.33921547704441724
inu	med		1.0610742568969727
inu	range		0.32981624603271475
qi	1		0.0
qi	2		0.0010801077417940722
rpve	csf		28.460605073397485
rpve	gm		12.290239955009097
rpve	wm		19.610641880582225
size	x		180
size	y		256
size	z		256
snr	csf		2.7614543890219467
snr	gm		11.439079499451612
snr	total		10.506383900532606
snr	wm		17.31861781312426
snrd	csf		16.349965248848548
snrd	gm		33.23724051386767
snrd	total		34.203283010371514
snrd	wm		53.02264326839832
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.7282909813437621
summary	bg	mad	12.35579776763916
summary	bg	mean	49.85182189941406
summary	bg	median	48.73928451538086
summary	bg	n	2806845.0
summary	bg	p05	31.244652175903322
summary	bg	p95	72.30170135498045
summary	bg	stdv	12.739259719848633
summary	csf	k	0.27640750726547436
summary	csf	mad	126.06482696533203
summary	csf	mean	315.1157531738281
summary	csf	median	308.3584899902344
summary	csf	n	12148.0
summary	csf	p05	154.93108367919922
summary	csf	p95	495.5937393188476
summary	csf	stdv	111.66065216064453
summary	gm	k	0.1414547945563016
summary	gm	mad	54.24348068237305
summary	gm	mean	625.6177368164062
summary	gm	median	626.8505859375
summary	gm	n	49607.0
summary	gm	p05	533.8871215820312
summary	gm	p95	713.1145874023437
summary	gm	stdv	54.79848861694336
summary	wm	k	1.7106777735243233
summary	wm	mad	41.80858612060547
summary	wm	mean	988.5536499023438
summary	wm	median	1000.0010375976562
summary	wm	n	177997.0
summary	wm	p05	863.0750122070312
summary	wm	p95	1060.9804443359376
summary	wm	stdv	57.74122619628906
tpm	overlap	csf	0.21180735528469086
tpm	overlap	gm	0.5362427234649658
tpm	overlap	wm	0.5366131663322449
wm2max			0.6012354326609826

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	b152a90e59a7c835a7b8a0b550214dc8
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.