MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.25740841629868144
cnr4.628642193540666
efc0.5764791893317065
fber111.84467315673828
fwhmavg3.928473333333334
fwhmx3.85002
fwhmy4.1409
fwhmz3.7945
icvscsf0.17822518016745148
icvsgm0.48255934278813123
icvswm0.33921547704441724
inumed1.0610742568969727
inurange0.32981624603271475
qi10.0
qi20.0010801077417940722
rpvecsf28.460605073397485
rpvegm12.290239955009097
rpvewm19.610641880582225
sizex180
sizey256
sizez256
snrcsf2.7614543890219467
snrgm11.439079499451612
snrtotal10.506383900532606
snrwm17.31861781312426
snrdcsf16.349965248848548
snrdgm33.23724051386767
snrdtotal34.203283010371514
snrdwm53.02264326839832
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.7282909813437621
summarybgmad12.35579776763916
summarybgmean49.85182189941406
summarybgmedian48.73928451538086
summarybgn2806845.0
summarybgp0531.244652175903322
summarybgp9572.30170135498045
summarybgstdv12.739259719848633
summarycsfk0.27640750726547436
summarycsfmad126.06482696533203
summarycsfmean315.1157531738281
summarycsfmedian308.3584899902344
summarycsfn12148.0
summarycsfp05154.93108367919922
summarycsfp95495.5937393188476
summarycsfstdv111.66065216064453
summarygmk0.1414547945563016
summarygmmad54.24348068237305
summarygmmean625.6177368164062
summarygmmedian626.8505859375
summarygmn49607.0
summarygmp05533.8871215820312
summarygmp95713.1145874023437
summarygmstdv54.79848861694336
summarywmk1.7106777735243233
summarywmmad41.80858612060547
summarywmmean988.5536499023438
summarywmmedian1000.0010375976562
summarywmn177997.0
summarywmp05863.0750122070312
summarywmp951060.9804443359376
summarywmstdv57.74122619628906
tpmoverlapcsf0.21180735528469086
tpmoverlapgm0.5362427234649658
tpmoverlapwm0.5366131663322449
wm2max0.6012354326609826

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumb152a90e59a7c835a7b8a0b550214dc8
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.